• Useful free/shareware for DNA sequence analysis
• Stuffit Expander ---Allow you to expand both Windows and MacIntosh versions of .sit file. 
• Sequence Scanner ---Allow you to view chromatogram files with Windows computers
• FinchTV ---Allow you to view chromatogram files with both Windows and MacIntosh computers
• EditView --- Allow you to view chromatogram files from ABI PRISM sequencer with MacIntosh Computers
• Chromas --- Allow to view chromatogram files from ABI PRISM sequencer with Windows based PC
• CLUSTALX --- Allow you to do multiple sequences alignments
• TreeView --- Allow you to view the phylogenetic tree constructed from DNA or protein sequences
• ReadSeq --- Allow you to convert different sequence formats
• RasMol --- Allows looking at molecular structures
• Adobe Acrobat Reader --- Allows viewing PDF files
• QuickTime4 --- Allows viewing QuickTime Movie files
• BioEdit ---A biological sequence alignment editor written for Windows 95/98/NT
• FTP explorer ---My favorite free FTP software for Windows 95/98/NT

• LongTrace-A free online software that generates long reads from ABI3730 trace files
• LongTrace
• Companies which make DNA sequencing related products
• PE Applied Biosystems
• Qiagen
• Promega
• Invitrogen
• DNA sequencing Analysis sites
• BioComputing at Whitehead
• The Sanger Center
• EMBL Web Server
• NCBI Web Server
• ENSEMBL Genome Browser
• Evolution and Phylogeny Laboratory
• Virtual Genome Center
• The Institute For Genomic Research (TIGR)
• ExPASy Molecular Biology Server
• Protein Data Bank (PDB)
• Ribosomal Database Project II (RDP)
• Some interesting sites
• Molecular biology protocols

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